I just realised I was VERY lazy in taking photo's. Thought I had been on top of that.....oops.
No photo to show, but in removing the above painted items, I had continued to pretty much strip the inside of the car. All trim aside from roof and dash were pulled out. I wanted to focus on the floors. Fortunately my floors were undamaged aside from some surface rust here and there.
What I noticed was surface rust mostly occurred where the rubber plugs (bungs) appear in the floor. As the car ages the rubber hardens on these plugs and I am assuming some water slowly creeps in through the bad seal. It's really the only place water can get in on the floorpan.
Problem I found is the water got through these plugs and then appeared to be slowly creeping under the tar based sound deadener that is all over the floor of the car. Visually everthing looked perfect, but once I started to pick away at some of the deadener (mostly near the floor plugs), there was some significant surface rust starting "under" the sound deadener itself where the water had been trapped. I was suprised by how far under the deadener the water had managed to migrate.
I decided to remove this sound deadener from around all the rubber plugs on the floor of the car. I peeled, prised and chiseled the stuff off wherever it rested near the floor plugs. I did not remove "all" the sound deadener though, I only removed it where I saw the possibility of moisture getting in and being captured underneath.
I left the majority of it on the car.
I read forums and I know some people remove it all, but I thought the stuff seemed to have been applied VERY effectively at the factory. I also suspect it actually PREVENTED rust from starting on some of those failed plugs and only started capturing moisture in areas due being subjected to water for the last 7 years or so (at a guess).
So - I removed the deadener only where I saw potential for it to trap moisture. Left the rest.
I used some silicon and put the old floor plugs back in, I treated the areas where I found rust with a neutraliser and I then proceeded to get the entire vehicle floor as clean as possible.
I grabbed a hard scrubbing brush, some boiling hot water, and proceed to scrub the entire floor of the car. Scrub/dry, scrub/dry. Anything that would not scrub off I picked off with my nails. I also went over it with wax and grease remover - so I got the floor as clean as humanly possible to make ready for aftermarket sound deadener.